exRNAdisease

Entry Detail

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General Information

Database ID: exR0798128 RNA Name: SON RNA Type: mRNA Chromosome: chr21 Starnd: + Coordinate: Start Site(bp): 33543038 End Site(bp): 33577481 External Links: ENSG00000159140

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACACA chr17 37084992 37406836 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAMTS1 chr21 26835755 26845409 - ADNP2 chr18 80109262 80147523 + ADSL chr22 40346500 40390463 + AFDN chr6 167826922 167972023 + AHCY chr20 34280268 34311802 - AIFM1 chrX 130129362 130165887 - AKAP8L chr19 15380050 15419141 - AL022238.4 chr22 40346529 40410054 + AL136454.1 chr1 192716132 192716653 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-143-3p chr5 149428978 149428998 + hsa-miR-6501-5p chr21 33550664 33550685 + hsa-miR-6501-3p chr21 33550705 33550727 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC051619.7 chr15 45200325 45200632 - AC105036.3 chr15 75527150 75601205 - AC132217.1 chr11 2129121 2129964 - AL021368.3 chr6 57855891 57856468 - AL135999.1 chr14 23561097 23568073 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.