exRNAdisease

Entry Detail

---



General Information

Database ID: exR0798534 RNA Name: STK4 RNA Type: mRNA Chromosome: chr20 Starnd: + Coordinate: Start Site(bp): 44966479 End Site(bp): 45080021 External Links: ENSG00000101109

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABCF2 chr7 151207837 151227166 - AC245033.1 chr15 82536788 82573194 - AGPAT1 chr6 32168212 32178096 - AGTRAP chr1 11736084 11754802 + AKR1B1 chr7 134442356 134459284 - AKT3 chr1 243488233 243851079 - ALDH9A1 chr1 165662216 165698863 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-let-7a-5p chr9 94175962 94175983 + hsa-miR-24-3p chr9 95086064 95086085 + hsa-miR-122-5p chr18 58451088 58451109 + hsa-miR-130a-3p chr11 57641252 57641273 + hsa-miR-135a-5p chr12 97563834 97563856 + hsa-miR-138-5p chr16 56858527 56858549 + hsa-miR-130b-3p chr22 21653354 21653375 + hsa-miR-362-5p chrX 50008968 50008991 + hsa-miR-135b-5p chr1 205448361 205448383 - hsa-miR-1224-5p chr3 184241405 184241423 + hsa-miR-1276 chr15 85770548 85770567 - hsa-let-7c-5p chr21 16539838 16539859 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC087190.3 chr16 9104848 9113181 + AC245033.4 chr15 82533175 82540008 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.