exRNAdisease

Entry Detail

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General Information

Database ID: exR0798537 RNA Name: STMN1 RNA Type: mRNA Chromosome: chr1 Starnd: - Coordinate: Start Site(bp): 25884181 End Site(bp): 25906991 External Links: ENSG00000117632

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - ABCE1 chr4 145098288 145129524 + ABHD16A chr6 31686955 31703356 - ABI2 chr2 203328239 203447728 + AC007192.1 chr19 18153158 18178117 + AC118549.1 chr1 77562416 77683419 - AC138811.2 chr16 18788063 18801519 - ACOT9 chrX 23701055 23766475 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACTN4 chr19 38647649 38731589 + ACTR1B chr2 97655939 97664044 - ACTR5 chr20 38748460 38772520 + AD000671.1 chr19 35745678 35754519 + ADAM19 chr5 157395534 157575775 - ADK chr10 74151202 74709963 + AGPS chr2 177392757 177559299 + AL117348.2 chr1 225886696 225924278 - AL136295.1 chr14 24189157 24213473 - AL136295.4 chr14 24180395 24190416 - ALDH7A1 chr5 126531200 126595362 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-194-5p chr11 64891404 64891425 - hsa-miR-3654 chr7 133034860 133034878 - hsa-miR-3917 chr1 25906384 25906403 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC005618.1 chr5 141326210 141329357 + AC006504.5 chr19 27793431 27984984 + AC023509.1 chr12 53441741 53467528 + AC106864.1 chr4 112693047 112706810 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.