Entry Detail



General Information

Database ID:exR0798928
RNA Name:TCF3
RNA Type:mRNA
Chromosome:chr19
Starnd:-
Coordinate:
Start Site(bp):1609290End Site(bp):1652615
External Links:ENSG00000071564



Disease Information

Disease Name:Colorectal Cancer
Disease Category:Cancers
MeSH ID:D003110
Type:Neoplasms/Digestive System Neoplasms
Alias:Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon



Expression Detail

Created with Highcharts 7.0.1Expression value (z-scores)Chart context menuExpression boxplotCaseControl00.250.50.7511.251.5
GEO ID:GSE83353
Description:Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle.
Experimental Design:Cancer vs Control
Case Disease Type:Colorectal Cancer
Case Disease SubType:NA
Case Sample:Colorectal Cancer
Control Sample:Healthy
Number of Case:3
Number of Control:3
Number of Samples:6





Regulatory Relationship

mRNA targets:
Gene SymbolChromosomeStart Site(bp)End Site(bp)Strand
ABHD17A
chr19
1876810
1885547
-
ACTR3
chr2
113890063
113962596
+
ADCY3
chr2
24819169
24919839
-
AIMP2
chr7
6009255
6023834
+
AL138752.2
chr9
37588413
38068687
-
AL139300.1
chr14
103562962
103685924
+
AL360181.3
chr10
133380017
133420271
+
ALDOA
chr16
30064164
30070457
+
miRNA targets:
miRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
hsa-miR-155-5p
chr21
25573983
25574006
+
hsa-miR-299-3p
chr14
101023832
101023853
+
circRNA targets:NA
lncRNA targets:
lncRNA SymbolChromosomeStart Site(bp)End Site(bp)Strand
AC006504.5
chr19
27793431
27984984
+
AC007383.2
chr2
206084605
206086564
+
AD000090.1
chr19
35557956
35581954
+
Display:



Experiment Detail

GEO ID:NA
Sample Source:NA
Source Fraction:NA
Platform:NA
Method:NA
Num of detected RNA Type:NA
Num of detected RNAs of this Type:NA
Sample treatment protocol:NA
RNA Extract protocol:NA
RNA library preparation protocol:NA



Reference

PMID:27441409
Title:Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle.
Author:Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E.
Journal:PLoS One. 2016 Jul 21;11(7):e0159522.
Description:A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.



 
AD000090.1