exRNAdisease

Entry Detail

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General Information

Database ID: exR0799659 RNA Name: TPI1 RNA Type: mRNA Chromosome: chr12 Starnd: + Coordinate: Start Site(bp): 6867119 End Site(bp): 6870948 External Links: ENSG00000111669

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ADAMTS8 chr11 130404923 130428609 - ADCY6 chr12 48766194 48789037 - AC020915.5 chr19 58228914 58315183 + ABLIM1 chr10 114431113 114768061 - ACTB chr7 5527148 5563784 - ABCF3 chr3 184186023 184194012 + AC004922.1 chr7 99325879 99394653 + AGBL5 chr2 27042364 27070622 + ALDH16A1 chr19 49453225 49471050 + AC007192.1 chr19 18153158 18178117 + AHSA1 chr14 77457870 77469472 + ACTG1 chr17 81509971 81523847 - ACADS chr12 120725774 120740008 + AC022384.1 chr3 10249372 10285796 + AL355916.3 chr14 61529128 61657964 + AC011455.2 chr19 38915404 38949855 - ACIN1 chr14 23058564 23095614 - AC245033.1 chr15 82536788 82573194 - AC091167.2 chr15 90249556 90272208 + ACSS2 chr20 34872146 34927962 + AL360181.3 chr10 133380017 133420271 + ACY1 chr3 51983340 51989197 + AC124312.1 chr15 24955034 25000276 + ACTR2 chr2 65227753 65271253 + ACLY chr17 41866917 41930542 - ALDH2 chr12 111766887 111817532 + ABCF1 chr6 30571393 30597179 + AC093323.1 chr4 6663396 6676755 + AHCY chr20 34280268 34311802 - AKAP1 chr17 57085092 57121346 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC004687.1 chr17 58330884 58332508 - AC007952.4 chr17 19112000 19112636 - AC009446.1 chr8 71675300 71702786 + AC023509.1 chr12 53441741 53467528 + AC026362.1 chr12 122975320 122982907 + AC068768.1 chr12 123262060 123262402 + AC079781.5 chr7 97851688 97972985 - AC092306.1 chr19 44803701 44804010 + AC106864.1 chr4 112693047 112706810 - AC245033.4 chr15 82533175 82540008 - AD000090.1 chr19 35557956 35581954 + AL136419.1 chr14 23969931 24051377 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.