exRNAdisease

Entry Detail

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General Information

Database ID: exR0799663 RNA Name: TPM4 RNA Type: mRNA Chromosome: chr19 Starnd: + Coordinate: Start Site(bp): 16067021 End Site(bp): 16103002 External Links: ENSG00000167460

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMDC chr11 77821109 77918432 + AAMP chr2 218264123 218270257 - AARSD1 chr17 42950526 42964498 - ABL1 chr9 130713016 130887675 + AC004922.1 chr7 99325879 99394653 + AC007192.1 chr19 18153158 18178117 + AC048338.1 chr12 122207779 122266423 - AC138696.1 chr8 143247110 143276403 + AC245033.1 chr15 82536788 82573194 - ACLY chr17 41866917 41930542 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADCY5 chr3 123282296 123449758 - ADCY6 chr12 48766194 48789037 - ADIPOR2 chr12 1688574 1788674 + ADPGK chr15 72751369 72785846 - ADRM1 chr20 62302093 62308862 + AGAP3 chr7 151085831 151144436 + AHCY chr20 34280268 34311802 - AKT2 chr19 40230317 40285536 - AL136454.1 chr1 192716132 192716653 + AL365205.1 chr6 41780349 41790141 + ALDOA chr16 30064164 30070457 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-139-5p chr11 72615102 72615124 - hsa-miR-185-5p chr22 20033153 20033174 + hsa-miR-1270 chr19 20399320 20399342 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008969.1 chr19 58002061 58011232 + AC016876.2 chr17 7581964 7584086 - AC026362.1 chr12 122975320 122982907 + AC026464.2 chr16 69463844 69466264 + AC079807.1 chr2 47905678 47907810 + AC099343.3 chr4 184471924 184472609 - AC132217.1 chr11 2129121 2129964 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.