exRNAdisease

Entry Detail

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General Information

Database ID: exR0800024 RNA Name: TUBB4B RNA Type: mRNA Chromosome: chr9 Starnd: + Coordinate: Start Site(bp): 137241287 End Site(bp): 137243707 External Links: ENSG00000188229

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABHD5 chr3 43690108 43734371 + ABLIM1 chr10 114431113 114768061 - AC004922.1 chr7 99325879 99394653 + AC008764.1 chr19 16479067 16628204 - AC011511.4 chr19 10315471 10320678 - AC068533.4 chr7 66087761 66152277 + AC092143.1 chr16 89919165 89936092 + ACBD6 chr1 180269653 180502954 - ACLY chr17 41866917 41930542 - ACSS2 chr20 34872146 34927962 + ACTR2 chr2 65227753 65271253 + ADAM10 chr15 58588809 58749791 - AEBP2 chr12 19404045 19720801 + AEN chr15 88621337 88632281 + AGO4 chr1 35808016 35857890 + AGRN chr1 1020120 1056118 + AIMP2 chr7 6009255 6023834 + AKAP7 chr6 131135467 131283535 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008105.3 chr17 45190931 45222222 - AC008738.5 chr19 33301279 33301940 + AC016355.1 chr15 67541072 67542604 - AC022075.1 chr12 10363638 10398506 + AD000090.1 chr19 35557956 35581954 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.