exRNAdisease

Entry Detail

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General Information

Database ID: exR0800715 RNA Name: YBX1 RNA Type: mRNA Chromosome: chr1 Starnd: + Coordinate: Start Site(bp): 42682418 End Site(bp): 42703805 External Links: ENSG00000065978

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ABL1 chr9 130713016 130887675 + ABR chr17 1003518 1229738 - AC008764.4 chr19 16577642 16660115 - AC010422.3 chr19 12643831 12648397 - AC092143.1 chr16 89919165 89936092 + AC118553.2 chr1 99970011 100083321 + AC120057.2 chr17 7240427 7244635 - AC138811.2 chr16 18788063 18801519 - ACAD8 chr11 134253495 134265855 + ACKR3 chr2 236567787 236582354 + ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ADAM11 chr17 44758988 44781846 + ADD2 chr2 70607618 70768225 - ADGRL2 chr1 81306160 81992436 + AEBP2 chr12 19404045 19720801 + AEN chr15 88621337 88632281 + AFG3L2 chr18 12328944 12377227 - AGL chr1 99850361 99924023 + AGO3 chr1 35930718 36072500 + AGO4 chr1 35808016 35857890 + AKR1E2 chr10 4786629 4848062 + AKT1 chr14 104769349 104795751 - AL136454.1 chr1 192716132 192716653 + AL928654.3 chr14 105487199 105492267 + ALDH9A1 chr1 165662216 165698863 - ALDOA chr16 30064164 30070457 + miRNA targets: NA circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC016876.2 chr17 7581964 7584086 - AC018521.1 chr17 47945424 47981736 + AC245014.3 chr1 145281116 145281462 + AL031320.2 chr6 143484979 143507327 + AL121992.1 chr1 15586136 15603626 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.