exRNAdisease

Entry Detail

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General Information

Database ID: exR0801108 RNA Name: ZNF354B RNA Type: mRNA Chromosome: chr5 Starnd: + Coordinate: Start Site(bp): 178859953 End Site(bp): 178888122 External Links: ENSG00000178338

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE83353 Description: Feasibility of unbiased RNA profiling of colorectal tumors: a proof of principle. Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 3 Number of Control: 3 Number of Samples: 6

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008982.1 chr19 38817471 38840178 - AC009690.3 chr15 72266746 72319946 - AC093668.1 chr7 102541501 102592444 - ACAD9 chr3 128879596 128916067 + ACLY chr17 41866917 41930542 - ACSF3 chr16 89088375 89164121 + ACTB chr7 5527148 5563784 - ACTR1A chr10 102461881 102502712 - ADAM15 chr1 155050566 155062775 + ADAM19 chr5 157395534 157575775 - ADARB1 chr21 45073853 45226560 + ADD2 chr2 70607618 70768225 - ADSL chr22 40346500 40390463 + AHCY chr20 34280268 34311802 - AHCYL1 chr1 109984765 110023742 + AIF1L chr9 131096476 131123152 + AKAP13 chr15 85380571 85749358 + AKT2 chr19 40230317 40285536 - AL021546.1 chr12 120438198 120460006 + AL022238.4 chr22 40346529 40410054 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-4517 chr16 28958587 28958611 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC002470.2 chr22 20979462 20998121 + AC005899.4 chr17 32328441 32329395 + AC007952.4 chr17 19112000 19112636 - AC011445.1 chr19 39314651 39320858 - AC067930.1 chr8 143579636 143580670 + AC084082.1 chr8 66112667 66126632 + AC144548.1 chr12 110387463 110445548 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL117378.1 chr6 131901963 131920565 + AL132780.1 chr14 22929607 22956374 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 27441409 Title: Feasibility of Unbiased RNA Profiling of Colorectal Tumors: A Proof of Principle. Author: Moshayoff V, Faktor O, Laghi L, Celesti G, Peretz T, Keret D, Cohen D, Israeli E. Journal: PLoS One. 2016 Jul 21;11(7):e0159522. Description: A panel of 8 plasma RNA markers as a preliminary panel for CRC detection and subset markers suitable for AA detection.