exRNAdisease

Entry Detail

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General Information

Database ID: exR0807501 RNA Name: NEAT1 RNA Type: lncRNA Chromosome: chr11 Starnd: + Coordinate: Start Site(bp): 65422774 End Site(bp): 65445540 External Links: ENSG00000245532

Disease Information

Disease Name: Colorectal Cancer Disease Category: Cancers MeSH ID: D003110 Type: Neoplasms/Digestive System Neoplasms Alias: Colonic Neoplasms//Colonic Neoplasm//Neoplasm, Colonic//Neoplasms, Colonic//Colon Neoplasms//Colon Neoplasm//Neoplasm, Colon//Neoplasms, Colon//Cancer of Colon//Colon Cancers//Cancer of the Colon//Colonic Cancer//Cancer, Colonic//Cancers, Colonic//Colonic Cancers//Colon Cancer//Cancer, Colon//Cancers, Colon

Expression Detail

GEO ID: GSE71008 Description: Plasma extracellular RNA profiles in healthy and cancer patients Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Colorectal Cancer Control Sample: Healthy Number of Case: 100 Number of Control: 50 Number of Samples: 150

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AAMP chr2 218264123 218270257 - ABL1 chr9 130713016 130887675 + ABRACL chr6 139028745 139043302 + AC010323.1 chr19 8308283 8321379 - AC011455.2 chr19 38915404 38949855 - ACIN1 chr14 23058564 23095614 - ACSL4 chrX 109624244 109733403 - ACTA2 chr10 88935074 88991339 - ACTB chr7 5527148 5563784 - ACTG1 chr17 81509971 81523847 - ACVR1B chr12 51951699 51997078 + ACVR2B chr3 38453890 38493142 + ADGRL2 chr1 81306160 81992436 + AEN chr15 88621337 88632281 + AFDN chr6 167826922 167972023 + AGFG1 chr2 227472152 227561214 + AIF1L chr9 131096476 131123152 + AKT2 chr19 40230317 40285536 - AL121845.3 chr20 63708864 63739103 + ABHD11 chr7 73736094 73738867 - AC010522.1 chr19 57819719 57858941 + AC107871.1 chr15 68184032 68229718 - ADAM9 chr8 38996869 39105261 + AGO4 chr1 35808016 35857890 + AL021546.1 chr12 120438198 120460006 + AL121845.2 chr20 63738270 63740398 + AL162231.3 chr9 34646645 34657113 + AL360181.3 chr10 133380017 133420271 + AL365205.1 chr6 41780349 41790141 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-2114-3p chrX 150228052 150228072 + hsa-miR-3126-5p chr2 69103691 69103712 + hsa-miR-485-5p chr14 101055427 101055448 + hsa-miR-205-5p chr1 209432166 209432187 + hsa-miR-4756-5p chr20 54068452 54068474 - hsa-miR-4677-3p chr1 243346225 243346246 + hsa-miR-1197 chr14 101025620 101025640 + hsa-miR-513a-5p chrX 147213538 147213555 - hsa-miR-4465 chr6 140683855 140683876 + hsa-miR-3187-3p chr19 813627 813646 + hsa-miR-520d-3p chr19 53720149 53720170 + hsa-miR-556-5p chr1 162342561 162342582 + hsa-miR-5581-3p chr1 37500935 37500956 - hsa-miR-5009-3p chr15 89883949 89883970 - hsa-miR-147a chr9 120244985 120245004 - hsa-miR-296-5p chr20 58817661 58817681 - hsa-miR-1287-5p chr10 98395271 98395292 - hsa-miR-3146 chr7 19705366 19705387 - hsa-miR-372-3p chr19 53787931 53787953 + hsa-miR-3614-5p chr17 56891319 56891341 - hsa-miR-197-3p chr1 109598940 109598961 + hsa-miR-506-3p chrX 147230753 147230773 - hsa-miR-296-3p chr20 58817626 58817647 - hsa-miR-6820-3p chr22 37967603 37967624 + hsa-miR-605-3p chr10 51299623 51299644 + hsa-miR-200c-3p chr12 6963742 6963764 + hsa-miR-212-5p chr17 2050328 2050350 - hsa-miR-4731-5p chr17 15251666 15251687 - hsa-miR-944 chr3 189829975 189829996 + hsa-miR-130a-5p chr11 57641212 57641233 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC010733.2 chr2 60925909 60931610 + AC067930.1 chr8 143579636 143580670 + AC243964.3 chr19 44631573 44725217 - AC245014.3 chr1 145281116 145281462 + AD000090.1 chr19 35557956 35581954 + AL121992.1 chr1 15586136 15603626 - Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26786760 Title: Plasma extracellular RNA profiles in healthy and cancer patients Author: Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, Tsai S, Kohli M, Boardman L, Patel T, Wang L Journal: Sci Rep. 2016 Jan 20;6:19413. Description: we performed RNA sequencing analysis on plasma extracellular vesicles derived from 50 healthy individuals and 142 cancer patients.