exRNAdisease

Entry Detail

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General Information

Database ID: exR0830440 RNA Name: XIST RNA Type: lncRNA Chromosome: chrX Starnd: - Coordinate: Start Site(bp): 73820649 End Site(bp): 73852723 External Links: ENSG00000229807

Disease Information

Disease Name: Pancreatic Cancer Disease Category: Cancers MeSH ID: D010190 Type: Neoplasms/Digestive System Neoplasms Alias: Pancreatic Neoplasms//Neoplasm, Pancreatic//Pancreatic Neoplasm//Pancreas Neoplasms//Neoplasm, Pancreas//Neoplasms, Pancreas//Pancreas Neoplasm//Neoplasms, Pancreatic//Cancer of Pancreas//Pancreas Cancers//Pancreas Cancer//Cancer, Pancreas//Cancers, Pancreas//Pancreatic Cancer//Cancer, Pancreatic//Cancers, Pancreatic//Pancreatic Cancers//Cancer of the Pancreas

Expression Detail

GEO ID: GSE71008 Description: Plasma extracellular RNA profiles in healthy and cancer patients Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Pancreatic Cancer Control Sample: Healthy Number of Case: 100 Number of Control: 50 Number of Samples: 150

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand AL139353.1 chr14 31334312 31457441 - ACADVL chr17 7217125 7225266 + AATF chr17 36948954 37056871 + ABRA chr8 106759483 106770244 - AADAT chr4 170060222 170091699 - ACSL3 chr2 222860942 222944639 + ALDH1B1 chr9 38392702 38398661 + AGAP1 chr2 235494043 236131800 + AGO2 chr8 140520156 140635633 - ADGRG2 chrX 18989307 19122637 - ACVR2B chr3 38453890 38493142 + AC245033.1 chr15 82536788 82573194 - AC107871.1 chr15 68184032 68229718 - AL121845.2 chr20 63738270 63740398 + ACACA chr17 37084992 37406836 - ACTN4 chr19 38647649 38731589 + ABCA3 chr16 2275881 2340746 - AHNAK chr11 62433542 62556235 - ADPGK chr15 72751369 72785846 - ACIN1 chr14 23058564 23095614 - ABCC1 chr16 15949577 16143074 + ADCY1 chr7 45574140 45723116 + AGK chr7 141551278 141655244 + ABCD3 chr1 94418389 94518666 + AC024592.3 chr19 5866171 5903787 - AC027644.4 chr7 66628958 66811189 + ADCY3 chr2 24819169 24919839 - AKT2 chr19 40230317 40285536 - AKAP1 chr17 57085092 57121346 + AHCTF1 chr1 246839098 246931967 - miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-518e-5p chr19 53729853 53729874 + hsa-miR-543 chr14 101032033 101032054 + hsa-miR-7-5p chr19 4770700 4770723 + hsa-miR-141-3p chr12 6964155 6964176 + hsa-miR-122-5p chr18 58451088 58451109 + hsa-miR-181a-5p chr1 198859108 198859130 - hsa-miR-4784 chr2 131491208 131491227 - hsa-miR-490-3p chr7 136903242 136903263 + hsa-miR-410-3p chr14 101065961 101065981 + hsa-miR-20b-5p chrX 134169850 134169872 - hsa-miR-144-5p chr17 28861583 28861604 - hsa-miR-301b-3p chr22 21653025 21653047 + hsa-miR-330-3p chr19 45639009 45639031 - hsa-miR-6835-3p chr6 34240714 34240736 + hsa-miR-34a-5p chr1 9151735 9151756 - hsa-miR-888-5p chrX 145994830 145994850 - hsa-miR-4739 chr17 79707216 79707240 - hsa-miR-520h chr19 53742566 53742587 + hsa-miR-523-5p chr19 53698400 53698421 + hsa-miR-4458 chr5 8460933 8460951 + hsa-miR-362-5p chrX 50008968 50008991 + hsa-miR-101-3p chr1 65058442 65058462 - hsa-miR-876-5p chr9 28863675 28863696 - hsa-miR-302a-3p chr4 112648186 112648208 - hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-3666 chr7 114653373 114653393 + hsa-miR-671-5p chr7 151238449 151238471 + hsa-miR-1252-5p chr12 79419261 79419282 + hsa-miR-519b-3p chr19 53695263 53695284 + hsa-miR-23c chrX 20017101 20017122 - circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC008982.2 chr19 38844729 38845499 - AC025271.4 chr15 57553955 57555680 + AL136985.3 chr1 58715609 58771295 + AC126365.1 chr17 20788071 20789584 + AC027097.1 chr18 57630302 57669296 + AL031428.1 chr1 23020147 23088058 - AC020658.3 chr15 40232082 40236109 + AC007952.4 chr17 19112000 19112636 - AL109804.1 chr20 3811384 3823882 + AC091564.7 chr11 6610883 6616594 - AC027290.2 chr12 122865335 122867021 + AC006064.5 chr12 6510275 6510522 + AL022157.1 chrX 57121662 57127243 + AL021368.3 chr6 57855891 57856468 - AC040162.3 chr16 67882461 67886367 + AL035425.4 chrX 108719949 108724944 - AC007780.1 chr17 68413623 68524949 + AC067930.1 chr8 143579636 143580670 + AL133215.2 chr10 101060029 101061005 - AC016876.2 chr17 7581964 7584086 - AL022323.4 chr22 25022594 25024652 - AC124068.2 chr15 89335053 89336161 + AC245014.3 chr1 145281116 145281462 + AC051619.7 chr15 45200325 45200632 - AC008124.1 chr12 45718046 45727775 - AC144548.1 chr12 110387463 110445548 - AL031282.2 chr1 1702736 1737688 - AC108010.1 chr7 128574751 128626473 + AD000090.1 chr19 35557956 35581954 + AC084082.1 chr8 66112667 66126632 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26786760 Title: Plasma extracellular RNA profiles in healthy and cancer patients Author: Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, Tsai S, Kohli M, Boardman L, Patel T, Wang L Journal: Sci Rep. 2016 Jan 20;6:19413. Description: we performed RNA sequencing analysis on plasma extracellular vesicles derived from 50 healthy individuals and 142 cancer patients.