exRNAdisease

Entry Detail

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General Information

Database ID: exR0839744 RNA Name: FGD5-AS1 RNA Type: lncRNA Chromosome: chr3 Starnd: - Coordinate: Start Site(bp): 14920347 End Site(bp): 14948424 External Links: ENSG00000225733

Disease Information

Disease Name: Prostate Cancer Disease Category: Cancers MeSH ID: D011471 Type: Neoplasms/Digestive System Neoplasms Alias: Prostatic Neoplasms//Prostate Neoplasms//Neoplasms, Prostate//Neoplasm, Prostate//Prostate Neoplasm//Neoplasms, Prostatic//Neoplasm, Prostatic//Prostatic Neoplasm//Prostate Cancer//Cancer, Prostate//Cancers, Prostate//Prostate Cancers//Cancer of the Prostate//Prostatic Cancer//Cancer, Prostatic//Cancers, Prostatic//Prostatic Cancers//Cancer of Prostate

Expression Detail

GEO ID: GSE71008 Description: Plasma extracellular RNA profiles in healthy and cancer patients Experimental Design: Cancer vs Control Case Disease Type: Colorectal Cancer Case Disease SubType: NA Case Sample: Prostate Cancer Control Sample: Healthy Number of Case: 100 Number of Control: 50 Number of Samples: 150

Regulatory Relationship

mRNA targets: Gene Symbol Chromosome Start Site(bp) End Site(bp) Strand ACOT7 chr1 6264269 6394391 - ADAM10 chr15 58588809 58749791 - AGAP3 chr7 151085831 151144436 + AGGF1 chr5 77029251 77065234 + miRNA targets: miRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand hsa-miR-3611 chr10 35079609 35079629 - hsa-miR-302c-3p chr4 112648366 112648388 - hsa-miR-421 chrX 74218392 74218414 - hsa-miR-1179 chr15 88608121 88608141 + hsa-miR-20a-5p chr13 91351072 91351094 + hsa-miR-493-5p chr14 100869075 100869096 + hsa-miR-497-5p chr17 7017979 7017999 - hsa-miR-105-5p chrX 152394458 152394480 - hsa-miR-520a-3p chr19 53690933 53690954 + hsa-miR-548o-3p chr20 38516607 38516628 + hsa-miR-196a-5p chr17 48632532 48632553 - hsa-miR-506-3p chrX 147230753 147230773 - hsa-miR-3622b-5p chr8 27701726 27701745 - hsa-miR-3681-5p chr2 12199138 12199159 + hsa-miR-126-5p chr9 136670616 136670636 + hsa-miR-892c-5p chrX 145992796 145992816 - hsa-miR-382-5p chr14 101054316 101054337 + hsa-miR-577 chr4 114656774 114656794 + hsa-miR-670-3p chr11 43559714 43559734 + hsa-miR-512-3p chr19 53666729 53666750 + hsa-miR-33a-5p chr22 41900949 41900969 + hsa-miR-424-5p chrX 134546680 134546701 - hsa-miR-3146 chr7 19705366 19705387 - hsa-miR-888-5p chrX 145994830 145994850 - hsa-miR-520c-3p chr19 53707506 53707527 + hsa-miR-15a-5p chr13 50049167 50049188 - hsa-miR-103a-3p chr5 168560904 168560926 - hsa-miR-520d-5p chr19 53720111 53720130 + hsa-miR-7853-5p chr6 6169380 6169400 - hsa-miR-1323 chr19 53671978 53671999 + circRNA targets: NA lncRNA targets: lncRNA Symbol Chromosome Start Site(bp) End Site(bp) Strand AC018521.1 chr17 47945424 47981736 + AC092902.2 chr3 125774714 125797953 + Display:

Experiment Detail

GEO ID: NA Sample Source: NA Source Fraction: NA Platform: NA Method: NA Num of detected RNA Type: NA Num of detected RNAs of this Type: NA Sample treatment protocol: NA RNA Extract protocol: NA RNA library preparation protocol: NA

Reference

PMID: 26786760 Title: Plasma extracellular RNA profiles in healthy and cancer patients Author: Yuan T, Huang X, Woodcock M, Du M, Dittmar R, Wang Y, Tsai S, Kohli M, Boardman L, Patel T, Wang L Journal: Sci Rep. 2016 Jan 20;6:19413. Description: we performed RNA sequencing analysis on plasma extracellular vesicles derived from 50 healthy individuals and 142 cancer patients.